Transcript: lnc-F3-7:7

Basic information

LNCipedia transcript ID: lnc-F3-7:7 
LNCipedia gene ID: lnc-F3-7
Location (hg38): chr1:94673129-94820219
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 709 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000421997.1; RP11-86H7.1-003; OTTHUMT00000029550.1; NONHSAT004610
Alternative gene names: ENSG00000224081.2; RP11-86H7.1; OTTHUMG00000010701.1; ENSG00000224081.3; LINC01057;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.9089 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:7 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNN3-3:2
4.0 LINC01057:2
4.1 LINC01057:2
5.0 LINC01057:2
5.1 lnc-CNN3-5:7
5.2 lnc-F3-7:7