Transcript: lnc-FAAP20-1:1

Basic information

LNCipedia transcript ID: lnc-FAAP20-1:1 
LNCipedia gene ID: lnc-FAAP20-1
Location (hg38): chr1:2212523-2220736
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 324 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000455; ENST00000442483.1; RP11-181G12.4-001; OTTHUMT00000004068.1; NONHSAT000403
Alternative gene names: XLOC_000677; linc-C1orf86; ENSG00000234396.2; RP11-181G12.4; OTTHUMG00000001405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -443.725 non-coding 
CPAT coding probability 13.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAAP20-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL590822.1-1:1
3.1 lnc-AL590822.1-1:1
4.0 lnc-AL590822.1-1:1
4.1 lnc-AL590822.1-1:1
5.0 lnc-AL590822.1-1:1
5.1 lnc-CLSTN1-117:1
5.2 lnc-FAAP20-1:1