Transcript: lnc-FAAP20-1:3

Basic information

LNCipedia transcript ID: lnc-FAAP20-1:3 
LNCipedia gene ID: lnc-FAAP20-1
Location (hg38): chr1:2212171-2212574
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 314 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000454; ENST00000420964.1; RP11-181G12.5-001; OTTHUMT00000004069.1; NONHSAT000401
Alternative gene names: XLOC_000677; linc-C1orf86; ENSG00000243558.1; RP11-181G12.5; OTTHUMG00000001406.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAAP20-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL590822.1-1:2
3.1 lnc-AL590822.1-1:2
4.0 lnc-AL590822.1-1:2
4.1 lnc-AL590822.1-1:2
5.0 lnc-AL590822.1-1:2
5.1 lnc-CLSTN1-117:3
5.2 lnc-FAAP20-1:3