Transcript: lnc-FABP5-4:1

Basic information

LNCipedia transcript ID: lnc-FABP5-4:1 
LNCipedia gene ID: lnc-FABP5-4
Ensembl Gene ID: ENSG00000254060
Ensembl Transcript ID: ENST00000518302
Location (hg38): chr8:81036964-81040831
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518302; ENST00000518302.1; RP11-172E10.1-001; OTTHUMT00000379356.1; NONHSAT127437
Alternative gene names: ENSG00000254060; RP11-172E10.1; ENSG00000254060.1; OTTHUMG00000164593.1; AC022778.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -323.1942 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FABP5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FABP5-4:1
3.1 lnc-FABP5-4:1
4.0 lnc-FABP5-4:1
4.1 lnc-FABP5-4:1
5.0 lnc-FABP5-4:1
5.1 lnc-CA2-46:1
5.2 lnc-FABP5-4:1