Transcript: lnc-FAM110B-1:2

Basic information

LNCipedia transcript ID: lnc-FAM110B-1:2 
LNCipedia gene ID: lnc-FAM110B-1
Location (hg38): chr8:58217202-58219076
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 206 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014720; NONHSAT126776
Alternative gene names: XLOC_006810; linc-UBXN2B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.664 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM110B-1:2 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM110B-1:2
3.1 lnc-FAM110B-1:2
4.0 lnc-FAM110B-1:2
4.1 lnc-FAM110B-1:2
5.0 lnc-FAM110B-1:2
5.1 lnc-SDCBP-8:9
5.2 lnc-FAM110B-1:2