Transcript: lnc-FAM110B-5:1

Basic information

LNCipedia transcript ID: lnc-FAM110B-5:1 
LNCipedia gene ID: lnc-FAM110B-5
Ensembl Gene ID: ENSG00000253871
Ensembl Transcript ID: ENST00000519714
RefSeq ID: NR_125818
Location (hg38): chr8:57343787-57364857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1832 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000519714; ENST00000519714.1; RP11-756K15.2-001; OTTHUMT00000378041.1; NONHSAT126748; NR_125818.1
Alternative gene names: ENSG00000253871; RP11-756K15.2; ENSG00000253871.1; OTTHUMG00000164271.1; AC068075.1; LOC101929488


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6211 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM110B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM110B-5:1
3.1 lnc-FAM110B-5:1
4.0 lnc-FAM110B-5:1
4.1 lnc-FAM110B-5:1
5.0 lnc-FAM110B-5:1
5.1 lnc-SDCBP-19:1
5.2 lnc-FAM110B-5:1