Transcript: lnc-FAM120AOS-2:1

Basic information

LNCipedia transcript ID: lnc-FAM120AOS-2:1 
LNCipedia gene ID: lnc-FAM120AOS-2
Ensembl Gene ID: ENSG00000237385
Ensembl Transcript ID: ENST00000443716
Location (hg38): chr9:93430342-93431299
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015849; ENST00000443716.1; RP11-165J3.5-001; OTTHUMT00000053138.1; NONHSAT133250
Alternative gene names: XLOC_007781; linc-C9orf129; ENSG00000237385.1; RP11-165J3.5; OTTHUMG00000020245.1; AL583839.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.092 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM120AOS-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM120AOS-1:1
3.1 lnc-FAM120AOS-2:1
4.0 lnc-FAM120AOS-2:1
4.1 lnc-FAM120AOS-2:1
5.0 lnc-FAM120AOS-2:1
5.1 lnc-FANCC-43:1
5.2 lnc-FAM120AOS-2:1