Transcript: lnc-FAM133B-1:1

Basic information

LNCipedia transcript ID: lnc-FAM133B-1:1 
LNCipedia gene ID: lnc-FAM133B-1
Location (hg38): chr7:92689980-92692845
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2740 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000500212
Alternative gene names: ENSG00000245682


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
TEGCHLIALKRPTGLK 92.3076923076923% antisense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.8529 non-coding 
CPAT coding probability 11.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAM133B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM133B-1:1
3.1 lnc-FAM133B-1:1
4.0 lnc-FAM133B-1:1
4.1 lnc-FAM133B-1:1
5.0 lnc-FAM133B-1:1
5.1 lnc-PEX1-5:1
5.2 lnc-FAM133B-1:1