Transcript: lnc-FAM135A-1:4

Basic information

LNCipedia transcript ID: lnc-FAM135A-1:4 
LNCipedia gene ID: lnc-FAM135A-1
Location (hg38): chr6:70395226-70399377
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 204 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012513; NONHSAT113443
Alternative gene names: XLOC_005341; linc-FAM135A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.4314 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM135A-1:4 no no no no

Available literature

  1. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  2. Gibb (2015), Activation of an endogenous retrovirus-associated long non-coding RNA in human adenocarcinoma., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM135A-1:4
3.1 lnc-FAM135A-1:4
4.0 lnc-FAM135A-1:4
4.1 lnc-FAM135A-1:4
5.0 lnc-FAM135A-1:4
5.1 lnc-CYB5R4-123:7
5.2 lnc-FAM135A-1:4