Transcript: lnc-FAM153B-6:3

Basic information

LNCipedia transcript ID: lnc-FAM153B-6:3 
LNCipedia gene ID: lnc-FAM153B-6
Ensembl Gene ID: ENSG00000250801
Ensembl Transcript ID: ENST00000502354
Location (hg38): chr5:175972615-175985856
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009549; ENST00000502354.1; RP11-91H12.3-002; OTTHUMT00000371918.1; NONHSAT105284
Alternative gene names: XLOC_004653; linc-FAM153B; ENSG00000250801.1; RP11-91H12.3; OTTHUMG00000163180.1; AC138965.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.1991 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM153B-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM153B-2:3
3.1 lnc-FAM153B-3:3
4.0 lnc-FAM153B-3:3
4.1 lnc-FAM153B-3:3
5.0 lnc-FAM153B-3:3
5.1 lnc-ATP6V0E1-95:3
5.2 lnc-FAM153B-6:3