Transcript: lnc-FAM153C-3:1

Basic information

LNCipedia transcript ID: lnc-FAM153C-3:1 
LNCipedia gene ID: lnc-FAM153C-3
Location (hg38): chr5:177961396-177961942
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 460 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010852; NONHSAT105492
Alternative gene names: XLOC_004669; linc-FAM153C-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 43.73 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAM153C-3:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM153C-3:1
3.1 lnc-FAM153C-3:1
4.0 lnc-FAM153C-3:1
4.1 lnc-FAM153C-3:1
5.0 lnc-FAM153C-3:1
5.1 lnc-MAML1-29:1
5.2 lnc-FAM153C-3:1