Transcript: lnc-FAM153C-5:1

Basic information

LNCipedia transcript ID: lnc-FAM153C-5:1 
LNCipedia gene ID: lnc-FAM153C-5
Ensembl Gene ID: ENSG00000250101
Ensembl Transcript ID: ENST00000511650
Location (hg38): chr5:177939622-177983054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511650.1; RP11-1252I4.2-001; OTTHUMT00000373553.1; NONHSAT105482
Alternative gene names: ENSG00000250101.1; RP11-1252I4.2; OTTHUMG00000163457.1; AC106795.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.4158 non-coding 
CPAT coding probability 3.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM153C-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM153C-5:1
4.0 lnc-FAM153C-5:1
4.1 lnc-FAM153C-5:1
5.0 lnc-FAM153C-5:1
5.1 lnc-MAML1-30:7
5.2 lnc-FAM153C-5:1