Transcript: lnc-FAM153C-5:9

Basic information

LNCipedia transcript ID: lnc-FAM153C-5:9 
LNCipedia gene ID: lnc-FAM153C-5
Ensembl Gene ID: ENSG00000249684
Ensembl Transcript ID: ENST00000366189
Location (hg38): chr5:177951948-177960149
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366189.3; RP11-423H2.3-004; OTTHUMT00000373531.1; NONHSAT105488
Alternative gene names: ENSG00000249684.1; RP11-423H2.3; OTTHUMG00000163453.1; ENSG00000249684.5; AC106795.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.4603 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM153C-5:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM153C-4:3
4.0 lnc-FAM153C-5:9
4.1 lnc-FAM153C-5:9
5.0 lnc-FAM153C-5:9
5.1 lnc-MAML1-30:14
5.2 lnc-FAM153C-5:9