Transcript: lnc-FAM167A-2:3

Basic information

LNCipedia transcript ID: lnc-FAM167A-2:3 
LNCipedia gene ID: lnc-FAM167A-2
Ensembl Gene ID: ENSG00000269954
Ensembl Transcript ID: ENST00000528629
Location (hg38): chr8:11556251-11558022
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 544 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528629.1; RP11-148O21.4-001; OTTHUMT00000390924.1; NONHSAT125066
Alternative gene names: ENSG00000255518.1; RP11-148O21.4; OTTHUMG00000166627.1; AC022239.3; ENSG00000269954.2; AC022239.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.1201 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM167A-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-148O21.2.1-2:1
4.0 lnc-RP11-148O21.2.1-2:1
4.1 lnc-RP11-148O21.2.1-2:1
5.0 lnc-RP11-148O21.2.1-2:1
5.1 lnc-PINX1-25:3
5.2 lnc-FAM167A-2:3