Transcript: lnc-FAM167A-2:4

Basic information

LNCipedia transcript ID: lnc-FAM167A-2:4 
LNCipedia gene ID: lnc-FAM167A-2
Location (hg38): chr8:11553224-11554207
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000527922.1; RP11-148O21.3-001; OTTHUMT00000383905.1; NONHSAT125065
Alternative gene names: ENSG00000254774.1; RP11-148O21.3; OTTHUMG00000165415.1; AC022239.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.6858 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM167A-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-148O21.3.1-1:1
4.0 lnc-RP11-148O21.3.1-1:1
4.1 lnc-RP11-148O21.3.1-1:1
5.0 lnc-RP11-148O21.3.1-1:1
5.1 lnc-PINX1-25:4
5.2 lnc-FAM167A-2:4