Transcript: lnc-FAM168B-1:2

Basic information

LNCipedia transcript ID: lnc-FAM168B-1:2 
LNCipedia gene ID: lnc-FAM168B-1
Ensembl Gene ID: ENSG00000233221
Ensembl Transcript ID: ENST00000446213
Location (hg38): chr2:130835438-130836994
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1273 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446213; ENST00000446213.2; AC133785.1-002; OTTHUMT00000333694.2; NONHSAT074384
Alternative gene names: ENSG00000233221; AC133785.1; ENSG00000233221.2; OTTHUMG00000154066.2; ENSG00000233221.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.6442 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM168B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM168B-1:2
3.1 lnc-FAM168B-1:2
4.0 lnc-FAM168B-1:2
4.1 lnc-FAM168B-1:2
5.0 lnc-FAM168B-1:2
5.1 lnc-PRSS40B-10:2
5.2 lnc-FAM168B-1:2