Transcript: lnc-FAM172A-7:4

Basic information

LNCipedia transcript ID: lnc-FAM172A-7:4 
LNCipedia gene ID: lnc-FAM172A-7
Ensembl Gene ID: ENSG00000249984
Ensembl Transcript ID: ENST00000503489
Location (hg38): chr5:92675956-92688254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 730 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009728; ENST00000503489; ENST00000503489.1; CTC-529L17.2-001; OTTHUMT00000370026.1; NONHSAT102779
Alternative gene names: XLOC_004927; linc-ARRDC3-2; ENSG00000249984; CTC-529L17.2; ENSG00000249984.1; OTTHUMG00000162675.1; AC026780.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.8048 non-coding 
CPAT coding probability 4.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM172A-7:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM172A-5:1
3.1 lnc-FAM172A-5:1
4.0 lnc-FAM172A-5:1
4.1 lnc-FAM172A-7:4
5.0 lnc-FAM172A-7:4
5.1 lnc-ANKRD34B-178:1
5.2 lnc-FAM172A-7:4