Transcript: lnc-FAM182B-4:1

Basic information

LNCipedia transcript ID: lnc-FAM182B-4:1 
LNCipedia gene ID: lnc-FAM182B-4
Ensembl Gene ID: ENSG00000230440
Ensembl Transcript ID: ENST00000416563
Location (hg38): chr20:26132887-26134198
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 271 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028034; ENST00000416563; ENST00000416563.1; RP13-329D4.3-001; OTTHUMT00000078482.1; NONHSAT079224
Alternative gene names: XLOC_013713; linc-ZNF337-7; ENSG00000230440; RP13-329D4.3; ENSG00000230440.1; OTTHUMG00000032148.1; AL391119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.6455 non-coding 
CPAT coding probability 6.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM182B-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM182B-4:1
3.1 lnc-FAM182B-4:1
4.0 lnc-FAM182B-4:1
4.1 lnc-FAM182B-4:1
5.0 lnc-FAM182B-4:1
5.1 lnc-CST4-71:1
5.2 lnc-FAM182B-4:1