Transcript: lnc-FAM189A1-3:1

Basic information

LNCipedia transcript ID: lnc-FAM189A1-3:1 
LNCipedia gene ID: lnc-FAM189A1-3
Ensembl Gene ID: ENSG00000259644
Ensembl Transcript ID: ENST00000560740
Location (hg38): chr15:29728186-29729531
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1346 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560740.1; RP11-680F8.4-001; OTTHUMT00000417268.1; NONHSAT041303
Alternative gene names: ENSG00000259644.1; RP11-680F8.4; OTTHUMG00000172190.1; AC022613.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.9032 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM189A1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM189A1-3:1
4.0 lnc-FAM189A1-3:1
4.1 lnc-FAM189A1-3:1
5.0 lnc-FAM189A1-3:1
5.1 lnc-OTUD7A-43:1
5.2 lnc-FAM189A1-3:1