Transcript: lnc-FAM189A2-1:1

Basic information

LNCipedia transcript ID: lnc-FAM189A2-1:1 
LNCipedia gene ID: lnc-FAM189A2-1
Location (hg38): chr9:69472466-69494513
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 443 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429567.1; RP11-470P21.2-001; OTTHUMT00000052580.1; NONHSAT131780
Alternative gene names: ENSG00000229312.1; RP11-470P21.2; OTTHUMG00000019981.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -433.1465 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM189A2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM189A2-1:1
4.0 lnc-FAM189A2-1:1
4.1 lnc-FAM189A2-1:1
5.0 lnc-FAM189A2-1:1
5.1 lnc-ZNF658-39:1
5.2 lnc-FAM189A2-1:1