Transcript: lnc-FAM189A2-1:2

Basic information

LNCipedia transcript ID: lnc-FAM189A2-1:2 
LNCipedia gene ID: lnc-FAM189A2-1
Ensembl Gene ID: ENSG00000229312
Ensembl Transcript ID: ENST00000429567
Location (hg38): chr9:69472466-69494513
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131781; ENST00000429567.2
Alternative gene names: ENSG00000229312.2; RP11-470P21.2; AL353693.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -433.1465 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM189A2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM189A2-1:2
4.0 lnc-FAM189A2-1:2
4.1 lnc-FAM189A2-1:2
5.0 lnc-FAM189A2-1:2
5.1 lnc-ZNF658-39:2
5.2 lnc-FAM189A2-1:2