Transcript: lnc-FAM196A-1:1

Basic information

LNCipedia transcript ID: lnc-FAM196A-1:1 
LNCipedia gene ID: lnc-FAM196A-1
Location (hg38): chr10:127024941-127026423
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 475 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432554.1; RP11-223P11.3-001; OTTHUMT00000050977.1
Alternative gene names: ENSG00000223528.1; RP11-223P11.3; OTTHUMG00000019247.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.5167 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM196A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM196A-1:1
4.0 lnc-FAM196A-1:1
4.1 lnc-FAM196A-1:1
5.0 lnc-FAM196A-1:1
5.1 lnc-ADAM12-5:5
5.2 lnc-FAM196A-1:1