Transcript: lnc-FAM196A-1:14

Basic information

LNCipedia transcript ID: lnc-FAM196A-1:14 
LNCipedia gene ID: lnc-FAM196A-1
Location (hg38): chr10:127013501-127015956
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 405 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000420941.1; RP11-223P11.2-001; OTTHUMT00000050976.1
Alternative gene names: ENSG00000232935.1; RP11-223P11.2; OTTHUMG00000019246.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3681 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM196A-1:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM196A-2:1
4.0 lnc-FAM196A-1:14
4.1 lnc-FAM196A-1:14
5.0 lnc-FAM196A-1:14
5.1 lnc-ADAM12-5:13
5.2 lnc-FAM196A-1:14