Transcript: lnc-FAM196A-1:3

Basic information

LNCipedia transcript ID: lnc-FAM196A-1:3 
LNCipedia gene ID: lnc-FAM196A-1
Location (hg38): chr10:127024941-127026507
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT016954; ENST00000432554.2
Alternative gene names: ENSG00000223528.3; RP11-223P11.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.5167 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM196A-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM196A-1:3
4.0 lnc-FAM196A-1:3
4.1 lnc-FAM196A-1:3
5.0 lnc-FAM196A-1:3
5.1 lnc-ADAM12-5:1
5.2 lnc-FAM196A-1:3