Transcript: lnc-FAM196A-1:4

Basic information

LNCipedia transcript ID: lnc-FAM196A-1:4 
LNCipedia gene ID: lnc-FAM196A-1
Ensembl Gene ID: ENSG00000232935
Ensembl Transcript ID: ENST00000420941
Location (hg38): chr10:127013501-127026475
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 750 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016953; ENST00000420941.2
Alternative gene names: ENSG00000232935.2; RP11-223P11.2; AL359094.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3681 non-coding 
CPAT coding probability 5.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM196A-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM196A-1:4
4.0 lnc-FAM196A-1:4
4.1 lnc-FAM196A-1:4
5.0 lnc-FAM196A-1:4
5.1 lnc-ADAM12-5:4
5.2 lnc-FAM196A-1:4