Transcript: lnc-FAM196A-1:8

Basic information

LNCipedia transcript ID: lnc-FAM196A-1:8 
LNCipedia gene ID: lnc-FAM196A-1
Ensembl Gene ID: ENSG00000223528
Ensembl Transcript ID: ENST00000595456
Location (hg38): chr10:127000707-127026423
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 822 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016949; ENST00000595456.1; ENST00000595456.5
Alternative gene names: ENSG00000223528.3; RP11-223P11.3; ENSG00000223528.7; AL359094.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.808 non-coding 
CPAT coding probability 5.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM196A-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM196A-1:8
4.0 lnc-FAM196A-1:8
4.1 lnc-FAM196A-1:8
5.0 lnc-FAM196A-1:8
5.1 lnc-ADAM12-5:7
5.2 lnc-FAM196A-1:8