Transcript: lnc-FAM19A3-2:1

Basic information

LNCipedia transcript ID: lnc-FAM19A3-2:1 
LNCipedia gene ID: lnc-FAM19A3-2
Ensembl Gene ID: ENSG00000224167
Ensembl Transcript ID: ENST00000456651
Location (hg38): chr1:112850028-112877871
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000274; ENST00000456651; ENST00000456651.1; RP3-522D1.1-002; OTTHUMT00000033261.1; NONHSAT005290
Alternative gene names: XLOC_000348; linc-LRIG2; ENSG00000224167; RP3-522D1.1; ENSG00000224167.1; OTTHUMG00000012023.1; AL390729.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.3291 non-coding 
CPAT coding probability 3.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM19A3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM19A3-1:1
3.1 lnc-FAM19A3-2:1
4.0 lnc-FAM19A3-2:1
4.1 lnc-FAM19A3-2:1
5.0 lnc-FAM19A3-2:1
5.1 lnc-MOV10-12:6
5.2 lnc-FAM19A3-2:1