Transcript: lnc-FAM19A5-16:1

Basic information

LNCipedia transcript ID: lnc-FAM19A5-16:1 
LNCipedia gene ID: lnc-FAM19A5-16
Ensembl Gene ID: ENSG00000279712
Ensembl Transcript ID: ENST00000623760
Location (hg38): chr22:47916728-47926264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9537 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623760.1
Alternative gene names: ENSG00000279712.1; CTA-280A3.2; FP325330.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.1017 non-coding 
CPAT coding probability 49.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAM19A5-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM19A5-16:1
4.1 lnc-FAM19A5-16:1
5.0 lnc-FAM19A5-16:1
5.1 lnc-GRAMD4-16:1
5.2 lnc-FAM19A5-16:1