Transcript: lnc-FAM20C-3:17

Basic information

LNCipedia transcript ID: lnc-FAM20C-3:17 
LNCipedia gene ID: lnc-FAM20C-3
Location (hg38): chr7:149636-155474
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2939 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000240859.1|MICT00000316759.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.3923 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-3:17 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM20C-3:17
5.0 lnc-FAM20C-3:17
5.1 lnc-GPER1-44:9
5.2 lnc-FAM20C-3:17