Transcript: lnc-FAM20C-5:1

Basic information

LNCipedia transcript ID: lnc-FAM20C-5:1 
LNCipedia gene ID: lnc-FAM20C-5
Location (hg38): chr7:77038-80418
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00012931; ENST00000478759; ENST00000478759.1; AC093627.8-001; OTTHUMT00000322475.1; NONHSAT118571
Alternative gene names: XLOC_005952; linc-FAM20C-3; ENSG00000242611; AC093627.8; ENSG00000242611.1; OTTHUMG00000151400.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.1494 non-coding 
CPAT coding probability 10.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-5:1
3.1 lnc-FAM20C-5:1
4.0 lnc-FAM20C-5:1
4.1 lnc-FAM20C-5:1
5.0 lnc-FAM20C-5:1
5.1 lnc-GPER1-46:1
5.2 lnc-FAM20C-5:1