Transcript: lnc-FAM20C-5:3

Basic information

LNCipedia transcript ID: lnc-FAM20C-5:3 
LNCipedia gene ID: lnc-FAM20C-5
Ensembl Gene ID: ENSG00000242611
Ensembl Transcript ID: ENST00000478759
Location (hg38): chr7:77038-81178
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1365 bp
Exons: 2
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000478759.2
Alternative gene names: ENSG00000242611.2; AC093627.8; AC093627.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -50.4716 non-coding 
CPAT coding probability 20.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM20C-5:3
5.0 lnc-FAM20C-5:3
5.1 lnc-GPER1-46:2
5.2 lnc-FAM20C-5:3