Transcript: lnc-FAM20C-6:1

Basic information

LNCipedia transcript ID: lnc-FAM20C-6:1 
LNCipedia gene ID: lnc-FAM20C-6
Ensembl Gene ID: ENSG00000249574
Ensembl Transcript ID: ENST00000515213
Location (hg38): chr7:379359-382712
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2146 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515213; ENST00000515213.1; AC226118.1-001; OTTHUMT00000359792.1
Alternative gene names: ENSG00000249574; AC226118.1; ENSG00000249574.1; OTTHUMG00000160233.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.64 non-coding 
CPAT coding probability 7.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-6:1
3.1 lnc-FAM20C-6:1
4.0 lnc-FAM20C-6:1
4.1 lnc-FAM20C-6:1
5.0 lnc-FAM20C-6:1
5.1 lnc-GPER1-34:1
5.2 lnc-FAM20C-6:1