Transcript: lnc-FAM213B-5:1

Basic information

LNCipedia transcript ID: lnc-FAM213B-5:1 
LNCipedia gene ID: lnc-FAM213B-5
Ensembl Gene ID: ENSG00000283259
Ensembl Transcript ID: ENST00000638002
Location (hg38): chr1:2773603-2776473
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1565 bp
Exons: 10
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000638002.1
Alternative gene names: ENSG00000283259.1; ABC14-1188822O7.1; AC242022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.0572 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM213B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM213B-5:1
5.0 lnc-FAM213B-5:1
5.1 lnc-VAMP3-59:1
5.2 lnc-FAM213B-5:1