Transcript: lnc-FAM222B-2:1

Basic information

LNCipedia transcript ID: lnc-FAM222B-2:1 
LNCipedia gene ID: lnc-FAM222B-2
Ensembl Gene ID: ENSG00000264066
Ensembl Transcript ID: ENST00000582320
Location (hg38): chr17:28861072-28861966
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 895 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052655; ENST00000582320.2
Alternative gene names: ENSG00000264066.3; MIR451B; ENSG00000264066.4; RP11-20B24.2; ENSG00000264066.5; MIR4732; ENSG00000264066.6; AC024267.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7711 non-coding 
CPAT coding probability 10.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM222B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FLOT2-1:2
4.0 lnc-FLOT2-1:2
4.1 lnc-FLOT2-1:2
5.0 lnc-FLOT2-1:2
5.1 lnc-SLC6A4-62:1
5.2 lnc-FAM222B-2:1