Transcript: lnc-FAM228A-1:1

Basic information

LNCipedia transcript ID: lnc-FAM228A-1:1 
LNCipedia gene ID: lnc-FAM228A-1
Ensembl Gene ID: ENSG00000242628
Ensembl Transcript ID: ENST00000413989
Location (hg38): chr2:24214381-24221506
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 232 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413989.1; AC009228.1-001; OTTHUMT00000324298.1; NONHSAT069581; ENST00000413989.5
Alternative gene names: ENSG00000242628.1; AC009228.1; OTTHUMG00000151893.1; ENSG00000242628.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3539 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM228A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf84-1:3
4.0 lnc-C2orf84-1:3
4.1 lnc-C2orf84-1:3
5.0 lnc-C2orf84-1:3
5.1 lnc-SNX17-55:2
5.2 lnc-FAM228A-1:1