Transcript: lnc-FAM230A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM230A-2:1 
LNCipedia gene ID: lnc-FAM230A-2
Ensembl Gene ID: ENSG00000276874
Ensembl Transcript ID: ENST00000622906
Location (hg38): chr22:18374106-18375689
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 375 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413504; ENST00000413504.1; AC011718.3-001; OTTHUMT00000319605.1; NONHSAT083521; ENST00000622906.1
Alternative gene names: ENSG00000227005; AC011718.3; ENSG00000227005.1; OTTHUMG00000150684.1; ENSG00000276874.1; AC011718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.3294 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM230A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF74-2:1
3.1 lnc-ZNF74-2:1
4.0 lnc-ZNF74-2:1
4.1 lnc-ZNF74-2:1
5.0 lnc-ZNF74-2:1
5.1 lnc-SERPIND1-52:1
5.2 lnc-FAM230A-2:1