Transcript: lnc-FAM234B-2:5

Basic information

LNCipedia transcript ID: lnc-FAM234B-2:5 
LNCipedia gene ID: lnc-FAM234B-2
Ensembl Gene ID: ENSG00000255621
Ensembl Transcript ID: ENST00000543321
Location (hg38): chr12:13000451-13040679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2403 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543321.1; RP11-377D9.3-001; OTTHUMT00000401005.1; NONHSAT027030
Alternative gene names: ENSG00000255621.1; RP11-377D9.3; OTTHUMG00000168772.1; AC023790.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.474 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM234B-2:5 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1467-2:1
4.0 lnc-KIAA1467-2:1
4.1 lnc-KIAA1467-2:1
5.0 lnc-KIAA1467-2:1
5.1 lnc-BCL2L14-30:5
5.2 lnc-FAM234B-2:5