Transcript: lnc-FAM236B-4:3

Basic information

LNCipedia transcript ID: lnc-FAM236B-4:3 
LNCipedia gene ID: lnc-FAM236B-4
Location (hg38): chrX:72781865-72782630
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 435 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000413458; ENST00000413458.1; RP1-172N19.1-001; OTTHUMT00000086423.1
Alternative gene names: ENSG00000229583; RP1-172N19.1; ENSG00000229583.1; OTTHUMG00000035613.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.3606 non-coding 
CPAT coding probability 7.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM236B-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHKA1-1:2
3.1 lnc-PHKA1-1:2
4.0 lnc-PHKA1-4:3
4.1 lnc-PHKA1-4:3
5.0 lnc-PHKA1-4:3
5.1 lnc-PHKA1-4:3
5.2 lnc-FAM236B-4:3