Transcript: lnc-FAM237A-1:3

Basic information

LNCipedia transcript ID: lnc-FAM237A-1:3 
LNCipedia gene ID: lnc-FAM237A-1
Ensembl Gene ID: ENSG00000231653
Ensembl Transcript ID: ENST00000415029
Location (hg38): chr2:206640073-206641282
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003083; ENST00000415029.1; AC010731.3-001; OTTHUMT00000336805.1; NONHSAT076564
Alternative gene names: XLOC_001821; linc-LOC200726; ENSG00000231653.1; AC010731.3; OTTHUMG00000154730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.1102 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM237A-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAM23-1:1
3.1 lnc-ADAM23-1:1
4.0 lnc-ADAM23-1:1
4.1 lnc-ADAM23-1:1
5.0 lnc-ADAM23-1:1
5.1 lnc-CPS1-48:3
5.2 lnc-FAM237A-1:3