Transcript: lnc-FAM237B-2:12

Basic information

LNCipedia transcript ID: lnc-FAM237B-2:12 
LNCipedia gene ID: lnc-FAM237B-2
Ensembl Gene ID: ENSG00000223969
Ensembl Transcript ID: ENST00000415965
Location (hg38): chr7:90590619-90595748
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 317 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415965.1; AC002456.2-002; OTTHUMT00000140200.1; ENST00000415965.5
Alternative gene names: ENSG00000223969.1; AC002456.2; OTTHUMG00000063906.3; ENSG00000223969.5; AC002456.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM237B-2:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTERF-6:3
4.0 lnc-MTERF-6:3
4.1 lnc-MTERF-6:3
5.0 lnc-MTERF-6:3
5.1 lnc-PEX1-31:12
5.2 lnc-FAM237B-2:12