Transcript: lnc-FAM241B-2:2

Basic information

LNCipedia transcript ID: lnc-FAM241B-2:2 
LNCipedia gene ID: lnc-FAM241B-2
Location (hg38): chr10:69667236-69718243
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3043 bp
Exons: 8
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017838; ENST00000416265; ENST00000416265.1; RP11-242G20.1-002; OTTHUMT00000048467.1; NONHSAT013814
Alternative gene names: XLOC_008506; linc-COL13A1; ENSG00000235645; RP11-242G20.1; ENSG00000235645.1; OTTHUMG00000018393.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.0948 non-coding 
CPAT coding probability 7.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM241B-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf35-1:2
3.1 lnc-C10orf35-2:2
4.0 lnc-C10orf35-2:2
4.1 lnc-C10orf35-2:2
5.0 lnc-C10orf35-2:2
5.1 lnc-MTRNR2L5-117:2
5.2 lnc-FAM241B-2:2