Transcript: lnc-FAM25C-29:1

Basic information

LNCipedia transcript ID: lnc-FAM25C-29:1 
LNCipedia gene ID: lnc-FAM25C-29
Ensembl Gene ID: ENSG00000273760
Ensembl Transcript ID: ENST00000619523
Location (hg38): chr10:47970043-47973496
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 826 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619523.1
Alternative gene names: ENSG00000273760.1; CH17-360D5.3; AC245041.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -50.15 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM25C-29:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-LRRC18-29:1
5.1 lnc-LRRC18-29:1
5.2 lnc-FAM25C-29:1