Transcript: lnc-FAM43A-6:1

Basic information

LNCipedia transcript ID: lnc-FAM43A-6:1 
LNCipedia gene ID: lnc-FAM43A-6
Location (hg38): chr3:194845917-194846637
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006371; NONHSAT094132
Alternative gene names: XLOC_002987; linc-MUC20-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.7961 non-coding 
CPAT coding probability 17.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43A-6:1 no no no no

Available literature

  1. Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM43A-5:1
3.1 lnc-FAM43A-6:1
4.0 lnc-FAM43A-6:1
4.1 lnc-FAM43A-6:1
5.0 lnc-FAM43A-6:1
5.1 lnc-MUC20-24:1
5.2 lnc-FAM43A-6:1