Transcript: lnc-FAM43B-20:3

Basic information

LNCipedia transcript ID: lnc-FAM43B-20:3 
LNCipedia gene ID: lnc-FAM43B-20
Ensembl Gene ID: ENSG00000284641
Ensembl Transcript ID: ENST00000641937
Location (hg38): chr1:20476630-20478937
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1156 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641937.1
Alternative gene names: ENSG00000284641.1; AL139254.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.9563 non-coding 
CPAT coding probability 6.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM43B-20:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-NBPF3-20:3
5.1 lnc-NBPF3-20:3
5.2 lnc-FAM43B-20:3