Transcript: lnc-FAM46C-1:1

Basic information

LNCipedia transcript ID: lnc-FAM46C-1:1 
LNCipedia gene ID: lnc-FAM46C-1
Location (hg38): chr1:117777649-117778901
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1011 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000504345; NONHSAT005497
Alternative gene names: ENSG00000251057; AL390877.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2955 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM46C-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM46C-1:1
3.1 lnc-FAM46C-1:1
4.0 lnc-FAM46C-1:1
4.1 lnc-FAM46C-1:1
5.0 lnc-FAM46C-1:1
5.1 lnc-WDR3-4:1
5.2 lnc-FAM46C-1:1