Transcript: lnc-FAM49A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM49A-2:1 
LNCipedia gene ID: lnc-FAM49A-2
Location (hg38): chr2:16791980-16797455
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 840 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000545594
Alternative gene names: ENSG00000256965; AC008069.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.1081 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM49A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM49A-2:1
3.1 lnc-FAM49A-2:1
4.0 lnc-FAM49A-2:1
4.1 lnc-FAM49A-2:1
5.0 lnc-FAM49A-2:1
5.1 lnc-RAD51AP2-7:1
5.2 lnc-FAM49A-2:1