Transcript: lnc-FAM50B-1:3

Basic information

LNCipedia transcript ID: lnc-FAM50B-1:3 
LNCipedia gene ID: lnc-FAM50B-1
Location (hg38): chr6:3831935-3856859
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 651 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000454396.1; RP11-420L9.4-001; OTTHUMT00000039695.1; NONHSAT107209
Alternative gene names: ENSG00000238158.1; RP11-420L9.4; OTTHUMG00000014149.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.736 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM50B-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM50B-1:3
4.0 lnc-FAM50B-1:3
4.1 lnc-FAM50B-1:3
5.0 lnc-FAM50B-1:3
5.1 lnc-PRPF4B-21:6
5.2 lnc-FAM50B-1:3