Transcript: lnc-FAM50B-1:6

Basic information

LNCipedia transcript ID: lnc-FAM50B-1:6 
LNCipedia gene ID: lnc-FAM50B-1
Ensembl Gene ID: ENSG00000238158
Ensembl Transcript ID: ENST00000454396
Location (hg38): chr6:3831933-3855737
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 347 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147377; ENST00000454396.2
Alternative gene names: ENSG00000238158.2; RP11-420L9.4; ENSG00000238158.6; AL391422.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.736 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM50B-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM50B-1:6
4.0 lnc-FAM50B-1:6
4.1 lnc-FAM50B-1:6
5.0 lnc-FAM50B-1:6
5.1 lnc-PRPF4B-21:5
5.2 lnc-FAM50B-1:6