Transcript: lnc-FAM72A-1:1

Basic information

LNCipedia transcript ID: lnc-FAM72A-1:1 
LNCipedia gene ID: lnc-FAM72A-1
Ensembl Gene ID: ENSG00000236889
Ensembl Transcript ID: ENST00000428399
Location (hg38): chr1:206175060-206177246
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 271 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000373; ENST00000428399; ENST00000428399.1; RP11-38J22.1-001; OTTHUMT00000087994.1; NONHSAT009042
Alternative gene names: XLOC_000538; linc-AVPR1B; ENSG00000236889; RP11-38J22.1; ENSG00000236889.1; OTTHUMG00000036117.1; AC244035.3; AC244035.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -640.9915 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM72A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72A-1:1
3.1 lnc-FAM72A-1:1
4.0 lnc-FAM72A-1:1
4.1 lnc-FAM72A-1:1
5.0 lnc-FAM72A-1:1
5.1 lnc-NUCKS1-14:1
5.2 lnc-FAM72A-1:1