Transcript: lnc-FAM72B-4:5

Basic information

LNCipedia transcript ID: lnc-FAM72B-4:5 
LNCipedia gene ID: lnc-FAM72B-4
Location (hg38): chr1:121494379-121510497
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 369 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000437523; ENST00000437523.1; AL592494.4-001; OTTHUMT00000036738.1; NONHSAT005616
Alternative gene names: ENSG00000228826; AL592494.4; ENSG00000228826.1; OTTHUMG00000013091.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.216 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM72B-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FCGR1B-3:1
3.1 lnc-FCGR1B-4:1
4.0 lnc-FCGR1B-4:1
4.1 lnc-FCGR1B-4:1
5.0 lnc-FCGR1B-4:1
5.1 lnc-FAM72B-4:2
5.2 lnc-FAM72B-4:5